ABOUT THE PODCAST
Host Bio
Allissa Dillman, PhD, Training and Engagement Director for the CFDE Training Center, is the founder and CEO of BioData Sage LLC, a company focused on providing a holistic approach to data science integration in the biomedical and biological science fields. She works with clients in industry, academia, government, and the nonprofit sector to create and support training programs on bioinformatics, cloud computing, and the tools and standards for reproducible data science practices for scientific and lay communities. She also creates community events, such as hackathons, where broad communities work towards solving real biomedical data challenges. Dr. Dillman is a member of the adjunct faculty at Montgomery College and has over 10 years of experience working for the National Institutes of Health (NIH). Her work focuses on lowering the barriers of entry for data science and cloud computing. She received her PhD in computational neuroscience as part of the graduate partnership program between NIH and the Karolinska Institute, Sweden.
Why Listen?
Decoding the Data Ecosystem: A CFDE Training Center Podcast is more than just a podcast; it's a community for anyone passionate about the potential of omics research to solve complex biological puzzles and address pressing health challenges. Whether you're a seasoned researcher, a student just starting out, or simply curious about the future of biology, this podcast offers valuable insights, inspiring stories, and practical advice to guide your journey through the world of omics research training and education.
Availability
Find Decoding the Data Ecosystem on your favorite podcast platform, including Spotify, Apple Podcasts, Google Podcasts, and more. Subscribe today to stay updated with the latest episodes and join the conversation shaping the future of omics research training and education. This podcast is hosted by Oak Ridge Associated Universities (ORAU). Learn more at orau.org.
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ABOUT THE PODCAST
Host Bio
Allissa Dillman, PhD, Training and Engagement Director for the CFDE Training Center, is the founder and CEO of BioData Sage LLC, a company focused on providing a holistic approach to data science integration in the biomedical and biological science fields. She works with clients in industry, academia, government, and the nonprofit sector to create and support training programs on bioinformatics, cloud computing, and the tools and standards for reproducible data science practices for scientific and lay communities. She also creates community events, such as hackathons, where broad communities work towards solving real biomedical data challenges. Dr. Dillman is a member of the adjunct faculty at Montgomery College and has over 10 years of experience working for the National Institutes of Health (NIH). Her work focuses on lowering the barriers of entry for data science and cloud computing. She received her PhD in computational neuroscience as part of the graduate partnership program between NIH and the Karolinska Institute, Sweden.
Why Listen?
Decoding the Data Ecosystem: A CFDE Training Center Podcast is more than just a podcast; it's a community for anyone passionate about the potential of omics research to solve complex biological puzzles and address pressing health challenges. Whether you're a seasoned researcher, a student just starting out, or simply curious about the future of biology, this podcast offers valuable insights, inspiring stories, and practical advice to guide your journey through the world of omics research training and education.
Availability
Find Decoding the Data Ecosystem on your favorite podcast platform, including Spotify, Apple Podcasts, Google Podcasts, and more. Subscribe today to stay updated with the latest episodes and join the conversation shaping the future of omics research training and education. This podcast is hosted by Oak Ridge Associated Universities (ORAU). Learn more at orau.org.
Episode 12: Exploring the Human Reference Atlas (HRA) Organ Gallery in Immersive 3D
Decoding the Data Ecosystem
46 minutes 35 seconds
3 weeks ago
Episode 12: Exploring the Human Reference Atlas (HRA) Organ Gallery in Immersive 3D
Description In this video podcast, Allissa Dillman and Andreas Bueckle discuss and demonstrate the Human Reference Atlas (HRA) Organ Gallery (https://humanatlas.io/hra-organ-gallery), a virtual reality (VR) application that lets users explore the HRA in immersive 3D. Andreas also presents the “HRA Powers of Ten,” a data integration module in development that uses the HRA Common Coordinate Framework (CCF) to harmonize, visualize, and explore data from the small/large intestine, lymph node, skin, and liver. The HRA Organ Gallery is available, for free, to anyone at https://www.meta.com/experiences/5696814507101529 (https://www.meta.com/experiences/5696814507101529). A paper describing the concept of the HRA Organ Gallery is available at https://doi.org/10.3389/fbinf.2023.1162723 (https://doi.org/10.3389/fbinf.2023.1162723). Single-cell atlassing portals such as the Human BioMolecular Atlas Project (HuBMAP), the Cellular Senescence Network (SenNet), and the Human Tumor Atlas Network (HTAN) publish datasets across scales for multiple organs of the adult human body in health, aging, and disease. This data can be interrogated semantically and spatially, usually on 2D screens with limited 3D affordances. Imagine, for example, examining the 3D location of a cell in the context of a tissue or zooming across multiple orders of magnitude. To be tackled effectively, 3D problems require 3D platforms. Guest Bio Andreas Bueckle, Ph.D. (https://andreas-bueckle.com (https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fandreas-bueckle.com%2F__%3B!!Lm8t6g!X4YCj4ZKY6cgKvycvsbPtnmkF1HraSpjJfHOOo709L6dUur6of_gZD3YpFwTEBJCVc5C8IPGMsDUv9qZsg%24&data=05%7C02%7Claurel.brown%40orau.org%7Cc404a3fb8c034a5b1c2908de16610a1d%7C64c12663ddf34823aa6836a6247905ab%7C0%7C0%7C638972803229775778%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=fYi2hNNUg0EcZJ0flEUHywBFrkntWL4BtfW19aoHy2w%3D&reserved=0)), is the Research Lead in the Cyberinfrastructure for Network Science Center at the Luddy School of Informatics, Computing, and Engineering (SICE) at Indiana University in Bloomington, IN. His research interest is interactive information visualization in XR. Andreas has a TEDx talk titled “Living and Learning in the Metaverse” (available on (https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fwww.youtube.com%2Fwatch%3Fv%3DBpnLKoAK1YE__%3B!!Lm8t6g!X4YCj4ZKY6cgKvycvsbPtnmkF1HraSpjJfHOOo709L6dUur6of_gZD3YpFwTEBJCVc5C8IPGMsDUIE4dSw%24&data=05%7C02%7Claurel.brown%40orau.org%7Cc404a3fb8c034a5b1c2908de16610a1d%7C64c12663ddf34823aa6836a6247905ab%7C0%7C0%7C638972803229808731%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=3tVYVT279xhU0t5%2Bd4IM4s1mCzVEqz4J0fY2DKN51KU%3D&reserved=0)YouTube (https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fwww.youtube.com%2Fwatch%3Fv%3DBpnLKoAK1YE__%3B!!Lm8t6g!X4YCj4ZKY6cgKvycvsbPtnmkF1HraSpjJfHOOo709L6dUur6of_gZD3YpFwTEBJCVc5C8IPGMsDUIE4dSw%24&data=05%7C02%7Claurel.brown%40orau.org%7Cc404a3fb8c034a5b1c2908de16610a1d%7C64c12663ddf34823aa6836a6247905ab%7C0%7C0%7C638972803229838280%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=qt4zrFgStr4ssJhzCGqrssr0yvfXHuoXEjsLVY31J0s%3D&reserved=0) and on the
Decoding the Data Ecosystem
ABOUT THE PODCAST
Host Bio
Allissa Dillman, PhD, Training and Engagement Director for the CFDE Training Center, is the founder and CEO of BioData Sage LLC, a company focused on providing a holistic approach to data science integration in the biomedical and biological science fields. She works with clients in industry, academia, government, and the nonprofit sector to create and support training programs on bioinformatics, cloud computing, and the tools and standards for reproducible data science practices for scientific and lay communities. She also creates community events, such as hackathons, where broad communities work towards solving real biomedical data challenges. Dr. Dillman is a member of the adjunct faculty at Montgomery College and has over 10 years of experience working for the National Institutes of Health (NIH). Her work focuses on lowering the barriers of entry for data science and cloud computing. She received her PhD in computational neuroscience as part of the graduate partnership program between NIH and the Karolinska Institute, Sweden.
Why Listen?
Decoding the Data Ecosystem: A CFDE Training Center Podcast is more than just a podcast; it's a community for anyone passionate about the potential of omics research to solve complex biological puzzles and address pressing health challenges. Whether you're a seasoned researcher, a student just starting out, or simply curious about the future of biology, this podcast offers valuable insights, inspiring stories, and practical advice to guide your journey through the world of omics research training and education.
Availability
Find Decoding the Data Ecosystem on your favorite podcast platform, including Spotify, Apple Podcasts, Google Podcasts, and more. Subscribe today to stay updated with the latest episodes and join the conversation shaping the future of omics research training and education. This podcast is hosted by Oak Ridge Associated Universities (ORAU). Learn more at orau.org.
